* fix: safely stop daemon before reindex
* fix(index): coordinate rebuilds with running MCP daemons (#1325)
Stop verified project daemons and confirm termination before recreating SQLite.
Fence daemon and proxy reopening throughout rebuilds while preserving foreign and newer locks.
Add Windows lifecycle coverage and cross-platform shutdown regressions.
Co-authored-by: Harry B ✦ <drewavesx0@gmail.com>
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* fix(mcp): fence project opens during index rebuilds after rebase
Carry the #1325 rebuild fence through the upstream explicit-project lifecycle, read-only engine opens, synchronous initialization retries, and direct writer acquisition. Preserve shared project leases, read-only fallback behavior, freshness handling, and direct-mode query pools.
Cover watched, unwatched, and read-only engines blocking during a foreign rebuild and recovering after the fence is released.
* fix(mcp): answer a running index rebuild as guidance, not a tool error (#1325)
A projectPath call during `codegraph index` hit assertNoRebuild's plain Error
and returned isError; it is an expected, temporary condition, so it now uses a
RebuildInProgressError that the tool handler answers success-shaped.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
---------
Co-authored-by: Harry B ✦ <drewavesx0@gmail.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Collapses the unreleased daemon controls into a single interactive command.
`codegraph daemon` (alias `daemons`) opens an arrow-key picker (current project's
daemon first, pre-selected), enter stops it, or pick "Stop all"; non-TTY prints a
plain list. Removes stop/list/ps; reuses the unchanged daemon-registry machinery;
the pick->stop loop is in daemon-manager.ts behind an injectable select (unit
tested). Validated live on macOS/Linux (real clack picker driven via pty) and
Windows (real runDaemonPicker + stopDaemonAt against a real daemon). Closes#845
follow-up.
Colby Mchenry