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When Windows-native and WSL CodeGraph both open the same .codegraph/codegraph.db under /mnt/<drive>/, SQLite's locking and -shm shared memory don't hold across the 9p/DrvFs bridge and WSL fails with a bare "disk I/O error". - A SQLite I/O error on the default index of a WSL /mnt/<drive> project is rewritten (in the SQLite adapter, so every open and query is covered) into the CODEGRAPH_DIR=.codegraph-wsl instruction. MCP answers it success-shaped, and a failed default-project open is reported instead of "no project loaded". - On WSL + /mnt/<drive> with CODEGRAPH_DIR unset, the data dir is resolved per root: an existing .codegraph-wsl/ wins, then an existing .codegraph/ index (kept, no silent re-index), else a fresh index goes in .codegraph-wsl/. `codegraph init` says where it went. Every other host is unchanged. Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>